phylip

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Description
The PHYLogeny Inference Package is a package of programs for inferring phylogenies (evolutionary trees) from sequences. Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites, distance matrices, and 0/1 discrete characters.
Associated Programs
Available deb Repositories (how-to add a respository)
Debian 32-bit 64-bit
stable 1:3.69-1 1:3.69-1
testing 1:3.69-1 1:3.69-1
sid 1:3.69-1 1:3.69-1

Ubuntu 32-bit 64-bit
lucid 1:3.68-2 1:3.68-2
precise 1:3.69-1 1:3.69-1

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